CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.38 rna-evm.model.Chr13.38 Chr13 1047511 1082901 PREDICTED: Glutamyl aminopeptidase GO:0006508;GO:0008237;GO:0008270 K11141
gene-evm.TU.Chr13.380 rna-evm.model.Chr13.380 Chr13 11163670 11165376 uncharacterized protein nan K14578
gene-evm.TU.Chr13.383 rna-evm.model.Chr13.383 Chr13 11261715 11264825 PREDICTED: Perlucin-like protein nan K06721
gene-evm.TU.Chr13.384 rna-evm.model.Chr13.384 Chr13 11290509 11296335 uncharacterized protein nan nan
gene-evm.TU.Chr13.385 rna-evm.model.Chr13.385 Chr13 11313365 11361189 PREDICTED: Glutamate-rich protein 6 nan K09912
gene-evm.TU.Chr13.388 rna-evm.model.Chr13.388 Chr13 11373401 11379694 PREDICTED: glutamate-rich protein 6-like nan K09512
gene-evm.TU.Chr13.389 rna-evm.model.Chr13.389 Chr13 11386889 11391386 PREDICTED: Isoaspartyl peptidase/L-asparaginase GO:0016787 K13051
gene-evm.TU.Chr13.39 rna-evm.model.Chr13.39.2 Chr13 1106708 1205053 PREDICTED: Protein couch potato GO:0003676 K25091
gene-evm.TU.Chr13.390 rna-evm.model.Chr13.390 Chr13 11401443 11412320 PREDICTED: Asparagine--tRNA ligase, cytoplasmic GO:0000166;GO:0003676;GO:0004812;GO:0005524;GO:0006418 K01893
gene-evm.TU.Chr13.391 rna-evm.model.Chr13.391 Chr13 11415732 11423873 PREDICTED: RNA-binding motif protein, X-linked 2 GO:0003676 K13107

For more detailed data, you can explore the Download section to access the full dataset.