CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.303 rna-evm.model.Chr13.303 Chr13 8412903 8421029 PREDICTED: Nuclear fragile X mental retardation-interacting protein 1 GO:0003676 K23308
gene-evm.TU.Chr13.304 rna-evm.model.Chr13.304 Chr13 8429271 8444246 PREDICTED: Methionine--tRNA ligase, mitochondrial GO:0000166;GO:0004812;GO:0004825;GO:0005524;GO:0006418;GO:0006431 K01874
gene-evm.TU.Chr13.305 rna-evm.model.Chr13.305 Chr13 8453147 8454191 PREDICTED: WD repeat-containing protein 53 GO:0005515 K24748
gene-evm.TU.Chr13.306 rna-evm.model.Chr13.306 Chr13 8466263 8497882 PREDICTED: mediator of RNA polymerase II transcription subunit 14 nan K25701
gene-evm.TU.Chr13.307 rna-evm.model.Chr13.307 Chr13 8533377 8552291 PREDICTED: Epithelial-stromal interaction protein 1 nan K10750
gene-evm.TU.Chr13.308 rna-evm.model.Chr13.308 Chr13 8561465 8562454 PREDICTED: Heparan sulfate glucosamine 3-O-sulfotransferase 3A1 GO:0008146 K08104
gene-evm.TU.Chr13.309 rna-evm.model.Chr13.309 Chr13 8570493 8600036 PREDICTED: Basic immunoglobulin-like variable motif-containing protein nan K16678
gene-evm.TU.Chr13.31 rna-evm.model.Chr13.31 Chr13 780636 788357 PREDICTED: Apolipoprotein D GO:0031409 K03098
gene-evm.TU.Chr13.310 rna-evm.model.Chr13.310 Chr13 8604111 8608670 PREDICTED: Immunoglobulin superfamily containing leucine-rich repeat protein 2 GO:0005515 K06839
gene-evm.TU.Chr13.311 rna-evm.model.Chr13.311 Chr13 8616975 8631490 PREDICTED: Golgin-45 GO:0007030;GO:0043001 K11499

For more detailed data, you can explore the Download section to access the full dataset.