CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.294 rna-evm.model.Chr13.294 Chr13 8067427 8070777 PREDICTED: Cytochrome P450 2U1 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07418
gene-evm.TU.Chr13.295 rna-evm.model.Chr13.295 Chr13 8091361 8100255 PREDICTED: Orexin receptor type 2 GO:0004930;GO:0007186;GO:0007631;GO:0016020;GO:0016499 K04239
gene-evm.TU.Chr13.297 rna-evm.model.Chr13.297 Chr13 8324212 8325053 uncharacterized protein nan nan
gene-evm.TU.Chr13.298 rna-evm.model.Chr13.298 Chr13 8334211 8350539 uncharacterized protein nan K06846
gene-evm.TU.Chr13.299 rna-evm.model.Chr13.299 Chr13 8363893 8365231 PREDICTED: Cysteinyl leukotriene receptor 1 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr13.3_evm.TU.Chr13.4 rna-evm.model.Chr13.3_evm.model.Chr13.4 Chr13 226904 283229 PREDICTED: Cilia- and flagella-associated protein 54 nan K25553
gene-evm.TU.Chr13.30 rna-evm.model.Chr13.30 Chr13 758887 765007 PREDICTED: Calexcitin-2 GO:0005509 K15825
gene-evm.TU.Chr13.300 rna-evm.model.Chr13.300 Chr13 8369353 8370510 PREDICTED: Cysteinyl leukotriene receptor 1 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr13.301 rna-evm.model.Chr13.301 Chr13 8375869 8387959 PREDICTED: Melanopsin GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr13.302 rna-evm.model.Chr13.302 Chr13 8389216 8407831 PREDICTED: golgin subfamily A member 4-like GO:0042981 K04399

For more detailed data, you can explore the Download section to access the full dataset.