CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.254 rna-evm.model.Chr13.254.1 Chr13 7075814 7081773 PREDICTED: Methionine-R-sulfoxide reductase B3, mitochondrial GO:0006979;GO:0016671;GO:0030091;GO:0033743;GO:0055114 K07305
gene-evm.TU.Chr13.255 rna-evm.model.Chr13.255 Chr13 7093663 7094446 uncharacterized protein nan K12326
gene-evm.TU.Chr13.256 rna-evm.model.Chr13.256 Chr13 7103772 7106106 uncharacterized protein nan nan
gene-evm.TU.Chr13.257 rna-evm.model.Chr13.257 Chr13 7120450 7132926 PREDICTED: DCN1-like protein 1 nan K17822
gene-evm.TU.Chr13.259 rna-evm.model.Chr13.259 Chr13 7145588 7147865 PREDICTED: putative sodium/solute symporter nan K18176
gene-evm.TU.Chr13.26 rna-evm.model.Chr13.26 Chr13 596202 596963 PREDICTED: snRNA-activating protein complex subunit 4 nan nan
gene-evm.TU.Chr13.260 rna-evm.model.Chr13.260 Chr13 7154385 7158815 PREDICTED: COP9 signalosome complex subunit 9 nan nan
gene-evm.TU.Chr13.261 rna-evm.model.Chr13.261 Chr13 7167074 7173634 PREDICTED: E3 ubiquitin/ISG15 ligase TRIM25 GO:0008270 K12026
gene-evm.TU.Chr13.262 rna-evm.model.Chr13.262 Chr13 7289026 7309908 PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 GO:0000398;GO:0003676;GO:0003723;GO:0046872;GO:0089701 K24273
gene-evm.TU.Chr13.263 rna-evm.model.Chr13.263 Chr13 7309992 7319826 PREDICTED: Motile sperm domain-containing protein 1 nan K06096

For more detailed data, you can explore the Download section to access the full dataset.