CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.264 rna-evm.model.Chr13.264 Chr13 7334201 7334581 PREDICTED: Heavy metal-binding protein HIP nan K24236
gene-evm.TU.Chr13.265 rna-evm.model.Chr13.265 Chr13 7337549 7386218 PREDICTED: Uncharacterized protein R554 GO:0016020 K06528
gene-evm.TU.Chr13.266 rna-evm.model.Chr13.266 Chr13 7390744 7401102 PREDICTED: lysosomal-associated membrane protein 1/2 GO:0016020 K06528
gene-evm.TU.Chr13.267 rna-evm.model.Chr13.267 Chr13 7401514 7402138 uncharacterized protein nan nan
gene-evm.TU.Chr13.269 rna-evm.model.Chr13.269 Chr13 7407463 7408509 PREDICTED: lysosomal-associated membrane protein 1/2 nan K06528
gene-evm.TU.Chr13.27 rna-evm.model.Chr13.27 Chr13 604520 660128 PREDICTED: Selenocysteine insertion sequence-binding protein 2-like GO:0035368 K19539
gene-evm.TU.Chr13.270 rna-evm.model.Chr13.270 Chr13 7414857 7416652 PREDICTED: FMRFamide receptor GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr13.271 rna-evm.model.Chr13.271 Chr13 7431983 7519971 PREDICTED: tankyrase 1 binding protein 1 nan K10422
gene-evm.TU.Chr13.272 rna-evm.model.Chr13.272 Chr13 7543079 7548074 PREDICTED: Potassium voltage-gated channel protein Shal GO:0005216;GO:0005249;GO:0005515;GO:0006811;GO:0006813;GO:0008076;GO:0016020;GO:0051260;GO:0055085 K04887
gene-evm.TU.Chr13.273 rna-evm.model.Chr13.273 Chr13 7554548 7560178 PREDICTED: Hydrogenase maturation factor HoxX GO:0003824;GO:0009058;GO:0016742 K19640

For more detailed data, you can explore the Download section to access the full dataset.