CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.285 rna-evm.model.Chr13.285 Chr13 7801949 7802932 uncharacterized protein nan nan
gene-evm.TU.Chr13.286 rna-evm.model.Chr13.286 Chr13 7876820 7879195 PREDICTED: Jerky protein homolog-like GO:0003676;GO:0003677 K07494
gene-evm.TU.Chr13.287 rna-evm.model.Chr13.287 Chr13 7892954 7896711 uncharacterized protein nan nan
gene-evm.TU.Chr13.288 rna-evm.model.Chr13.288 Chr13 7897073 7915512 PREDICTED: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase GO:0016491 K00078
gene-evm.TU.Chr13.289 rna-evm.model.Chr13.289 Chr13 7920145 7922528 PREDICTED: Cytochrome P450 3A29 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07424
gene-evm.TU.Chr13.29 rna-evm.model.Chr13.29 Chr13 714300 740520 PREDICTED: WD repeat-containing protein 49 GO:0005515 K24747
gene-evm.TU.Chr13.290 rna-evm.model.Chr13.290 Chr13 7925463 7941248 PREDICTED: Steroid 17-alpha-hydroxylase/17,20 lyase GO:0005506;GO:0016705;GO:0020037;GO:0055114 K00512
gene-evm.TU.Chr13.291 rna-evm.model.Chr13.291 Chr13 7952136 7960562 PREDICTED: Steroid 17-alpha-hydroxylase/17,20 lyase GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07408
gene-evm.TU.Chr13.292 rna-evm.model.Chr13.292 Chr13 7977207 8054191 PREDICTED: Cytochrome P450 2U1 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07418
gene-evm.TU.Chr13.293 rna-evm.model.Chr13.293 Chr13 8066414 8067391 PREDICTED: Cytochrome P450 1A1 nan K24532

For more detailed data, you can explore the Download section to access the full dataset.