CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.335 rna-evm.model.Chr13.335 Chr13 9217515 9219221 PREDICTED: E3 ubiquitin-protein ligase MSL2 GO:0061630;GO:0072487 K13164
gene-evm.TU.Chr13.336 rna-evm.model.Chr13.336 Chr13 9227101 9276151 PREDICTED: Ankyrin repeat domain-containing protein 42 GO:0004888;GO:0004930;GO:0005515;GO:0007166;GO:0007186;GO:0016020 K17593
gene-evm.TU.Chr13.337 rna-evm.model.Chr13.337 Chr13 9280539 9305101 PREDICTED: DNA-directed RNA polymerase II subunit RPB1 GO:0003677;GO:0003899;GO:0005665;GO:0006351;GO:0006366 K03006
gene-evm.TU.Chr13.338 rna-evm.model.Chr13.338 Chr13 9359356 9359739 uncharacterized protein GO:0046872 nan
gene-evm.TU.Chr13.339 rna-evm.model.Chr13.339 Chr13 9465941 9505231 PREDICTED: Tumor necrosis factor ligand superfamily member 10 GO:0005164;GO:0006955;GO:0016020 K04721
gene-evm.TU.Chr13.341 rna-evm.model.Chr13.341 Chr13 9774674 9815948 PREDICTED: Hemicentin-1 nan K16857
gene-evm.TU.Chr13.342 rna-evm.model.Chr13.342 Chr13 9817666 9823107 PREDICTED: Monocarboxylate transporter 14 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr13.343 rna-evm.model.Chr13.343 Chr13 9826360 9832333 PREDICTED: Monocarboxylate transporter 14 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr13.344_evm.TU.Chr13.345 rna-evm.model.Chr13.344_evm.model.Chr13.345 Chr13 9839549 9883112 PREDICTED: Myosin-VIIa GO:0003774;GO:0005515;GO:0005524;GO:0005856;GO:0016459 K10359
gene-evm.TU.Chr13.347 rna-evm.model.Chr13.347 Chr13 9902529 9910662 PREDICTED: Homocysteine S-methyltransferase 1 nan K00547

For more detailed data, you can explore the Download section to access the full dataset.