CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.348 rna-evm.model.Chr13.348 Chr13 9915443 9923828 PREDICTED: Programmed cell death protein 10 nan K18269
gene-evm.TU.Chr13.349 rna-evm.model.Chr13.349 Chr13 9934325 9969628 PREDICTED: Arf-GAP domain and FG repeat-containing protein 1 GO:0005096 K15044
gene-evm.TU.Chr13.352 rna-evm.model.Chr13.352 Chr13 10005579 10008035 PREDICTED: Serine/threonine-protein kinase STY46 GO:0004672;GO:0005524;GO:0006468 K04427
gene-evm.TU.Chr13.353 rna-evm.model.Chr13.353 Chr13 10009487 10022833 PREDICTED: Dual specificity protein kinase shkE GO:0004672;GO:0005524;GO:0005525;GO:0006468 K04427
gene-evm.TU.Chr13.354_evm.TU.Chr13.350_evm.TU.Chr13.351 rna-evm.model.Chr13.354_evm.model.Chr13.350_evm.model.Chr13.351 Chr13 9976742 10040654 PREDICTED: Mitogen-activated protein kinase kinase kinase 13 GO:0004672;GO:0005524;GO:0006468 K04427
gene-evm.TU.Chr13.355 rna-evm.model.Chr13.355 Chr13 10048967 10060336 PREDICTED: Glutathione synthetase GO:0004363;GO:0005524;GO:0006750 K21456
gene-evm.TU.Chr13.356 rna-evm.model.Chr13.356 Chr13 10064266 10087902 PREDICTED: Ribonuclease H2 subunit B GO:0032299 K10744
gene-evm.TU.Chr13.361 rna-evm.model.Chr13.361 Chr13 10264845 10267258 PREDICTED: adhesion G protein-coupled receptor L2 nan nan
gene-evm.TU.Chr13.362 rna-evm.model.Chr13.362 Chr13 10567532 10569148 PREDICTED: Tigger transposable element-derived protein 1 GO:0003676 K22594
gene-evm.TU.Chr13.363 rna-evm.model.Chr13.363 Chr13 10810370 10819693 PREDICTED: Neuromedin-U receptor 2 GO:0004930;GO:0007186;GO:0016020 K05053

For more detailed data, you can explore the Download section to access the full dataset.