CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.313 rna-evm.model.Chr13.313 Chr13 8721894 8726118 PREDICTED: calpain-5 [EC:3.4.22.-] nan K12137
gene-evm.TU.Chr13.314 rna-evm.model.Chr13.314 Chr13 8730596 8740401 PREDICTED: calpain-5 [EC:3.4.22.-] nan K16789
gene-evm.TU.Chr13.315 rna-evm.model.Chr13.315 Chr13 8741301 8755812 uncharacterized protein nan K06560
gene-evm.TU.Chr13.316 rna-evm.model.Chr13.316 Chr13 8767499 8775052 uncharacterized protein nan K24387
gene-evm.TU.Chr13.317 rna-evm.model.Chr13.317 Chr13 8781329 8785538 PREDICTED: ALX homeobox protein 1 GO:0003677 K09452
gene-evm.TU.Chr13.318 rna-evm.model.Chr13.318 Chr13 8831829 8836819 PREDICTED: Hemicentin-1 nan K24436
gene-evm.TU.Chr13.32 rna-evm.model.Chr13.32 Chr13 857458 859536 PREDICTED: Major egg antigen nan K09542
gene-evm.TU.Chr13.320 rna-evm.model.Chr13.320 Chr13 8847345 8858649 PREDICTED: Death domain-containing protein 1 GO:0005515;GO:0007165 K10130
gene-evm.TU.Chr13.322 rna-evm.model.Chr13.322 Chr13 8870959 8882983 PREDICTED: Metalloreductase STEAP3 nan K19876
gene-evm.TU.Chr13.323 rna-evm.model.Chr13.323 Chr13 8905366 8925363 PREDICTED: Glutamate receptor ionotropic, delta-1 GO:0004970;GO:0005216;GO:0006811;GO:0016020;GO:0038023 K05198

For more detailed data, you can explore the Download section to access the full dataset.