CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.242 rna-evm.model.Chr13.242 Chr13 6612013 6613805 PREDICTED: YjcZ family sporulation protein nan nan
gene-evm.TU.Chr13.243 rna-evm.model.Chr13.243 Chr13 6619823 6621116 PREDICTED: Pesticidal crystal protein Cry11Bb nan K08758
gene-evm.TU.Chr13.244 rna-evm.model.Chr13.244 Chr13 6625409 6631361 PREDICTED: S-formylglutathione hydrolase GO:0018738;GO:0046294 K01070
gene-evm.TU.Chr13.245 rna-evm.model.Chr13.245 Chr13 6643272 6663004 uncharacterized protein nan K03834
gene-evm.TU.Chr13.246 rna-evm.model.Chr13.246 Chr13 6676383 6713616 PREDICTED: Thrombomodulin (Fragment) GO:0005509;GO:0005515 K06826
gene-evm.TU.Chr13.248 rna-evm.model.Chr13.248 Chr13 6801048 6989614 PREDICTED: tumor necrosis factor receptor superfamily member 16 GO:0005515 K02583
gene-evm.TU.Chr13.250 rna-evm.model.Chr13.250 Chr13 7020496 7027202 PREDICTED: LOW QUALITY PROTEIN: protein NLRC5-like nan K22266
gene-evm.TU.Chr13.251 rna-evm.model.Chr13.251 Chr13 7027803 7038597 PREDICTED: Cyclic GMP-AMP synthase nan K17834
gene-evm.TU.Chr13.252 rna-evm.model.Chr13.252 Chr13 7043455 7051822 PREDICTED: Protein mono-ADP-ribosyltransferase PARP12 GO:0046872 K15259
gene-evm.TU.Chr13.253 rna-evm.model.Chr13.253 Chr13 7054372 7062841 PREDICTED: Protein mono-ADP-ribosyltransferase PARP12 GO:0046872 K15259

For more detailed data, you can explore the Download section to access the full dataset.