CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.228 rna-evm.model.Chr13.228 Chr13 6309412 6317945 PREDICTED: Delta-like protein 1 GO:0005509 K06051
gene-evm.TU.Chr13.229 rna-evm.model.Chr13.229 Chr13 6354395 6354754 uncharacterized protein nan nan
gene-evm.TU.Chr13.23_evm.TU.Chr13.22 rna-evm.model.Chr13.23_evm.model.Chr13.22 Chr13 494446 511066 PREDICTED: Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial nan K01969
gene-evm.TU.Chr13.233 rna-evm.model.Chr13.233 Chr13 6410357 6410628 PREDICTED: receptor-type tyrosine-protein phosphatase kappa [EC:3.1.3.48] nan K24333
gene-evm.TU.Chr13.234 rna-evm.model.Chr13.234 Chr13 6411912 6413674 uncharacterized protein nan K06518
gene-evm.TU.Chr13.235 rna-evm.model.Chr13.235 Chr13 6426864 6443135 PREDICTED: Tenascin-X nan K24333
gene-evm.TU.Chr13.236 rna-evm.model.Chr13.236 Chr13 6449456 6459401 PREDICTED: Scavenger receptor class F member 1 nan K18033
gene-evm.TU.Chr13.237 rna-evm.model.Chr13.237 Chr13 6506946 6508429 uncharacterized protein nan K12560
gene-evm.TU.Chr13.24_evm.TU.Chr13.25 rna-evm.model.Chr13.24_evm.model.Chr13.25 Chr13 575787 595136 PREDICTED: Meiosis-specific nuclear structural protein 1 nan K25441
gene-evm.TU.Chr13.240 rna-evm.model.Chr13.240 Chr13 6590924 6598110 PREDICTED: Tyrosine-protein kinase receptor Tie-2 nan K18033

For more detailed data, you can explore the Download section to access the full dataset.