CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.189 rna-evm.model.Chr1.189 Chr1 5928876 5959323 PREDICTED: Type I inositol 3,4-bisphosphate 4-phosphatase GO:0016316 K01109
gene-evm.TU.Chr1.1890 rna-evm.model.Chr1.1890 Chr1 60213367 60231003 PREDICTED: Ubiquitin carboxyl-terminal hydrolase 46 GO:0016579;GO:0004843 K11842
gene-evm.TU.Chr1.1891 rna-evm.model.Chr1.1891 Chr1 60239623 60240474 PREDICTED: PML-RARA-regulated adapter molecule 1 nan K26901
gene-evm.TU.Chr1.1892 rna-evm.model.Chr1.1892 Chr1 60242031 60251959 PREDICTED: GTP-binding protein 8 GO:0005525 K03978
gene-evm.TU.Chr1.1894 rna-evm.model.Chr1.1894 Chr1 60268480 60271906 uncharacterized protein nan K19873
gene-evm.TU.Chr1.1895 rna-evm.model.Chr1.1895 Chr1 60276304 60278067 uncharacterized protein nan K19873
gene-evm.TU.Chr1.1897 rna-evm.model.Chr1.1897 Chr1 60359884 60365035 uncharacterized protein nan K19873
gene-evm.TU.Chr1.1899 rna-evm.model.Chr1.1899 Chr1 60413433 60426345 PREDICTED: fukutin-related protein [EC:2.7.8.-] nan K19873
gene-evm.TU.Chr1.19 rna-evm.model.Chr1.19 Chr1 746591 747131 PREDICTED: tigger transposable element-derived protein 6-like nan nan
gene-evm.TU.Chr1.190 rna-evm.model.Chr1.190 Chr1 5970597 6014170 PREDICTED: Heat shock 70 kDa protein 12A nan K04043

For more detailed data, you can explore the Download section to access the full dataset.