CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.2213 rna-evm.model.Chr13.2213 Chr13 66256496 66258379 PREDICTED: WSC domain-containing protein 1 nan K22312
gene-evm.TU.Chr13.2215 rna-evm.model.Chr13.2215 Chr13 66292927 66317668 PREDICTED: nuclear apoptosis-inducing factor 1 GO:0005634;GO:0006915 K23221
gene-evm.TU.Chr13.2216 rna-evm.model.Chr13.2216 Chr13 66359456 66360400 PREDICTED: Uncharacterized UDP-glucose epimerase YtcB GO:0003824;GO:0050662 K01784
gene-evm.TU.Chr13.2217 rna-evm.model.Chr13.2217 Chr13 66390581 66391726 PREDICTED: Uncharacterized protein KIAA1958 nan K24675
gene-evm.TU.Chr13.222 rna-evm.model.Chr13.222 Chr13 6157524 6165711 PREDICTED: Monocarboxylate transporter 14 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr13.2221 rna-evm.model.Chr13.2221 Chr13 66751645 66785604 PREDICTED: exocyst complex component 1 nan K24696
gene-evm.TU.Chr13.223 rna-evm.model.Chr13.223 Chr13 6175746 6206912 PREDICTED: Protein FAM43A GO:0005515 K12474
gene-evm.TU.Chr13.224 rna-evm.model.Chr13.224 Chr13 6217694 6233175 PREDICTED: Intraflagellar transport protein 81 homolog GO:0015631;GO:0030992;GO:0042073;GO:0060271 K19677
gene-evm.TU.Chr13.225 rna-evm.model.Chr13.225 Chr13 6237043 6286130 PREDICTED: Anosmin-1 GO:0005515;GO:0005576;GO:0030414 K23413
gene-evm.TU.Chr13.226 rna-evm.model.Chr13.226 Chr13 6293156 6295884 PREDICTED: YjcZ family sporulation protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.