CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.2197 rna-evm.model.Chr13.2197 Chr13 65235092 65267962 PREDICTED: Unconventional myosin-XVI GO:0003774;GO:0005515;GO:0005524;GO:0016459 K17481
gene-evm.TU.Chr13.2198 rna-evm.model.Chr13.2198 Chr13 65307062 65310160 PREDICTED: retinoic acid-induced protein 1 nan K15352
gene-evm.TU.Chr13.2199 rna-evm.model.Chr13.2199 Chr13 65320470 65325915 uncharacterized protein nan K03158
gene-evm.TU.Chr13.2200 rna-evm.model.Chr13.2200 Chr13 65338162 65341022 PREDICTED: S-antigen protein nan nan
gene-evm.TU.Chr13.2203 rna-evm.model.Chr13.2203 Chr13 65838890 65839993 PREDICTED: Galactoside 2-alpha-L-fucosyltransferase 1 GO:0005975;GO:0008107;GO:0016020 K00718
gene-evm.TU.Chr13.2204 rna-evm.model.Chr13.2204 Chr13 65864482 65865165 uncharacterized protein nan nan
gene-evm.TU.Chr13.2209 rna-evm.model.Chr13.2209 Chr13 65915382 65927465 PREDICTED: Carbohydrate sulfotransferase 15 GO:0008146 K08106
gene-evm.TU.Chr13.221 rna-evm.model.Chr13.221 Chr13 6141291 6146807 PREDICTED: C1q domain-containing protein DC6, partial nan K23284
gene-evm.TU.Chr13.2210 rna-evm.model.Chr13.2210 Chr13 65978319 65979038 PREDICTED: Transposon Tf2-6 polyprotein nan K21037
gene-evm.TU.Chr13.2211 rna-evm.model.Chr13.2211 Chr13 66011139 66015976 uncharacterized protein nan K12575

For more detailed data, you can explore the Download section to access the full dataset.