CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.2188 rna-evm.model.Chr13.2188 Chr13 64922230 64944473 PREDICTED: Cullin-3-A GO:0006511;GO:0031625 K03869
gene-evm.TU.Chr13.2189 rna-evm.model.Chr13.2189 Chr13 64947796 64954893 PREDICTED: 5'-nucleotidase domain-containing protein 2 nan nan
gene-evm.TU.Chr13.219 rna-evm.model.Chr13.219 Chr13 6054305 6070082 PREDICTED: Serine/threonine-protein kinase Nek1 GO:0004672;GO:0005524;GO:0006468 K08857
gene-evm.TU.Chr13.2190 rna-evm.model.Chr13.2190 Chr13 64956152 64973600 PREDICTED: 5'-nucleotidase domain-containing protein 3 nan K01794
gene-evm.TU.Chr13.2191 rna-evm.model.Chr13.2191 Chr13 64975627 64978360 PREDICTED: BRISC and BRCA1-A complex member 1 nan K20415
gene-evm.TU.Chr13.2192 rna-evm.model.Chr13.2192 Chr13 64985455 64986517 PREDICTED: L-xylulose reductase nan K03331
gene-evm.TU.Chr13.2193 rna-evm.model.Chr13.2193 Chr13 65119607 65124084 uncharacterized protein nan nan
gene-evm.TU.Chr13.2194 rna-evm.model.Chr13.2194 Chr13 65127759 65148061 PREDICTED: Short stature homeobox protein GO:0003677 K09331
gene-evm.TU.Chr13.2195 rna-evm.model.Chr13.2195 Chr13 65160272 65194590 PREDICTED: Reticulocyte-binding protein 2 homolog a nan K10750
gene-evm.TU.Chr13.2196 rna-evm.model.Chr13.2196 Chr13 65231437 65232011 PREDICTED: Unconventional myosin-XVI GO:0003774;GO:0005524;GO:0016459 K17481

For more detailed data, you can explore the Download section to access the full dataset.