CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.2173 rna-evm.model.Chr13.2173 Chr13 64360399 64389376 PREDICTED: 5-hydroxytryptamine receptor 2A GO:0004930;GO:0007186;GO:0016020 K04157
gene-evm.TU.Chr13.2175 rna-evm.model.Chr13.2175 Chr13 64430733 64431318 PREDICTED: Hypothetical protein ORPV_800 nan nan
gene-evm.TU.Chr13.2178 rna-evm.model.Chr13.2178 Chr13 64488014 64518662 PREDICTED: D(2) dopamine receptor GO:0004930;GO:0007186;GO:0016020 K04157
gene-evm.TU.Chr13.2179 rna-evm.model.Chr13.2179 Chr13 64286803 64536222 PREDICTED: 26S proteasome non-ATPase regulatory subunit 1 GO:0030234 K03032
gene-evm.TU.Chr13.218 rna-evm.model.Chr13.218 Chr13 6051117 6052174 PREDICTED: KRAB domain-containing zinc finger protein nan nan
gene-evm.TU.Chr13.2181 rna-evm.model.Chr13.2181 Chr13 64663692 64674052 uncharacterized protein nan nan
gene-evm.TU.Chr13.2183 rna-evm.model.Chr13.2183 Chr13 64785922 64786653 PREDICTED: Mucin-1 nan K14191
gene-evm.TU.Chr13.2185 rna-evm.model.Chr13.2185 Chr13 64858255 64866138 PREDICTED: Agmatinase, mitochondrial GO:0046872 K27001
gene-evm.TU.Chr13.2186 rna-evm.model.Chr13.2186 Chr13 64869074 64889790 PREDICTED: Leucine-rich repeat-containing protein 63 GO:0005515 K19613
gene-evm.TU.Chr13.2187 rna-evm.model.Chr13.2187 Chr13 64889908 64902799 PREDICTED: Ankyrin-2 GO:0005515 K02580

For more detailed data, you can explore the Download section to access the full dataset.