CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.2162 rna-evm.model.Chr13.2162 Chr13 64062235 64080505 PREDICTED: Very long-chain specific acyl-CoA dehydrogenase, mitochondrial GO:0016627;GO:0050660;GO:0055114 K09479
gene-evm.TU.Chr13.2163 rna-evm.model.Chr13.2163 Chr13 64084522 64089681 PREDICTED: Mediator of RNA polymerase II transcription subunit 11 GO:0003712;GO:0006357;GO:0016592 K15131
gene-evm.TU.Chr13.2164 rna-evm.model.Chr13.2164 Chr13 64089804 64090439 PREDICTED: MKRN2 opposite strand protein nan K20726
gene-evm.TU.Chr13.2165 rna-evm.model.Chr13.2165 Chr13 64099619 64121489 PREDICTED: Autophagy-related protein 16-1 GO:0005515 K17890
gene-evm.TU.Chr13.2166 rna-evm.model.Chr13.2166 Chr13 64127793 64199149 PREDICTED: Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 GO:0005515;GO:0046856 K15909
gene-evm.TU.Chr13.2167 rna-evm.model.Chr13.2167 Chr13 64208950 64220436 PREDICTED: Ectin (Fragment) nan K16857
gene-evm.TU.Chr13.2169 rna-evm.model.Chr13.2169 Chr13 64252399 64255792 uncharacterized protein GO:0005216;GO:0006811;GO:0016020 K04975
gene-evm.TU.Chr13.217 rna-evm.model.Chr13.217 Chr13 6050584 6050862 PREDICTED: endonuclease/reverse transcriptase nan K23449
gene-evm.TU.Chr13.2170 rna-evm.model.Chr13.2170 Chr13 64260936 64269961 PREDICTED: Oxalate:formate antiporter GO:0016020;GO:0055085 K08177
gene-evm.TU.Chr13.2172 rna-evm.model.Chr13.2172 Chr13 64286915 64351457 PREDICTED: 26S proteasome non-ATPase regulatory subunit 1 GO:0030234 K03032

For more detailed data, you can explore the Download section to access the full dataset.