CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.2146_evm.TU.Chr13.2150 rna-evm.model.Chr13.2146_evm.model.Chr13.2150 Chr13 63610695 63649938 uncharacterized protein nan K06503
gene-evm.TU.Chr13.215 rna-evm.model.Chr13.215 Chr13 5950488 5951654 PREDICTED: FMRFamide receptor GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr13.2151 rna-evm.model.Chr13.2151 Chr13 63651310 63660137 PREDICTED: GPI mannosyltransferase 4 GO:0016757 K08098
gene-evm.TU.Chr13.2152 rna-evm.model.Chr13.2152 Chr13 63660245 63673755 PREDICTED: Nuclear cap-binding protein subunit 2 GO:0000339;GO:0003676;GO:0005846;GO:0045292 K12883
gene-evm.TU.Chr13.2153 rna-evm.model.Chr13.2153 Chr13 63712684 63743267 PREDICTED: Myosin catalytic light chain LC-1, mantle muscle GO:0005509 K12751
gene-evm.TU.Chr13.2154 rna-evm.model.Chr13.2154 Chr13 63746840 63759744 PREDICTED: Tctex1 domain-containing protein 2 nan K22866
gene-evm.TU.Chr13.2155 rna-evm.model.Chr13.2155 Chr13 63842108 63842530 uncharacterized protein nan nan
gene-evm.TU.Chr13.2158 rna-evm.model.Chr13.2158 Chr13 63916673 63918978 PREDICTED: Probable serine/threonine-protein kinase roco5 GO:0005515;GO:0007165 K08844
gene-evm.TU.Chr13.216 rna-evm.model.Chr13.216 Chr13 6043985 6049647 PREDICTED: SPRY domain-containing protein 7 GO:0005515 K10345
gene-evm.TU.Chr13.2161 rna-evm.model.Chr13.2161 Chr13 63978149 64056438 PREDICTED: Beta-arrestin-1 GO:0007165 K04439

For more detailed data, you can explore the Download section to access the full dataset.