CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.2130 rna-evm.model.Chr13.2130 Chr13 63100013 63124658 PREDICTED: Orexin receptor type 2 GO:0004930;GO:0007186;GO:0016020 K08378
gene-evm.TU.Chr13.2131 rna-evm.model.Chr13.2131 Chr13 63188993 63189493 PREDICTED: histone-lysine N-methyltransferase SETMAR [EC:2.1.1.43] nan nan
gene-evm.TU.Chr13.2133 rna-evm.model.Chr13.2133 Chr13 63359824 63379132 uncharacterized protein GO:0005164;GO:0006955;GO:0016020 K03161
gene-evm.TU.Chr13.2135 rna-evm.model.Chr13.2135 Chr13 63445492 63451066 PREDICTED: tumor necrosis factor ligand superfamily member 15 GO:0005164;GO:0006955;GO:0016020 K03161
gene-evm.TU.Chr13.2139 rna-evm.model.Chr13.2139 Chr13 63486154 63518302 PREDICTED: UDP-glucuronic acid decarboxylase 1 nan K08678
gene-evm.TU.Chr13.214 rna-evm.model.Chr13.214 Chr13 5892181 5893716 PREDICTED: Uncharacterized protein KIAA1958 homolog nan K24675
gene-evm.TU.Chr13.2141 rna-evm.model.Chr13.2141 Chr13 63518366 63542452 PREDICTED: Propionyl-CoA carboxylase alpha chain, mitochondrial GO:0005524;GO:0046872 K01965
gene-evm.TU.Chr13.2142 rna-evm.model.Chr13.2142 Chr13 63556491 63562540 uncharacterized protein nan K12944
gene-evm.TU.Chr13.2143 rna-evm.model.Chr13.2143 Chr13 63568077 63569624 uncharacterized protein nan K13141
gene-evm.TU.Chr13.2144 rna-evm.model.Chr13.2144 Chr13 63576749 63599443 PREDICTED: Transmembrane 9 superfamily member 2 GO:0016020 K17086

For more detailed data, you can explore the Download section to access the full dataset.