CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.2120 rna-evm.model.Chr13.2120 Chr13 62663197 62671933 PREDICTED: calpain-5 [EC:3.4.22.-] nan K19058
gene-evm.TU.Chr13.2121 rna-evm.model.Chr13.2121 Chr13 62675340 62677505 PREDICTED: adhesion G protein-coupled receptor L2 nan nan
gene-evm.TU.Chr13.2122 rna-evm.model.Chr13.2122 Chr13 62682140 62831078 PREDICTED: D-beta-hydroxybutyrate dehydrogenase nan K00059
gene-evm.TU.Chr13.2123 rna-evm.model.Chr13.2123 Chr13 62837207 62840332 PREDICTED: adhesion G protein-coupled receptor L2 nan nan
gene-evm.TU.Chr13.2124 rna-evm.model.Chr13.2124 Chr13 62843198 62885094 PREDICTED: Sodium/hydrogen exchanger 2 GO:0006812;GO:0006814;GO:0006885;GO:0015299;GO:0015385;GO:0016020;GO:0055085 K05742
gene-evm.TU.Chr13.2126 rna-evm.model.Chr13.2126 Chr13 62995109 62995765 PREDICTED: Protein ALP1-like nan K23222
gene-evm.TU.Chr13.2127 rna-evm.model.Chr13.2127 Chr13 62995774 62996202 PREDICTED: nuclease HARBI1 [EC:3.1.-.-] nan K23222
gene-evm.TU.Chr13.2128 rna-evm.model.Chr13.2128 Chr13 63020335 63022595 PREDICTED: Cell adhesion molecule 4 nan K06782
gene-evm.TU.Chr13.2129 rna-evm.model.Chr13.2129 Chr13 63044392 63046362 PREDICTED: Involucrin nan K24296
gene-evm.TU.Chr13.213 rna-evm.model.Chr13.213 Chr13 5852882 5868839 PREDICTED: Hemicentin-1 nan K04596

For more detailed data, you can explore the Download section to access the full dataset.