CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.211 rna-evm.model.Chr13.211 Chr13 5818612 5822783 PREDICTED: Complement C1q tumor necrosis factor-related protein 3 nan K24236
gene-evm.TU.Chr13.2110 rna-evm.model.Chr13.2110 Chr13 62369459 62369884 uncharacterized protein nan nan
gene-evm.TU.Chr13.2111 rna-evm.model.Chr13.2111 Chr13 62370170 62382184 PREDICTED: Tigger transposable element-derived protein 6 GO:0003676 K08883
gene-evm.TU.Chr13.2112 rna-evm.model.Chr13.2112 Chr13 62382913 62389375 uncharacterized protein nan nan
gene-evm.TU.Chr13.2113 rna-evm.model.Chr13.2113 Chr13 62389232 62404538 PREDICTED: Trafficking protein particle complex subunit 1 GO:0016192;GO:0030008 K20300
gene-evm.TU.Chr13.2115 rna-evm.model.Chr13.2115 Chr13 62512094 62516772 PREDICTED: Integrase/recombinase xerD homolog GO:0003677;GO:0006310;GO:0015074 K04763
gene-evm.TU.Chr13.2116 rna-evm.model.Chr13.2116 Chr13 62545739 62578627 PREDICTED: UNC93-like protein nan K26151
gene-evm.TU.Chr13.2118 rna-evm.model.Chr13.2118 Chr13 62588275 62638566 PREDICTED: calpain-5 [EC:3.4.22.-] nan K06296
gene-evm.TU.Chr13.2119 rna-evm.model.Chr13.2119 Chr13 62654164 62659630 PREDICTED: calpain-5 [EC:3.4.22.-] nan K02195
gene-evm.TU.Chr13.212 rna-evm.model.Chr13.212 Chr13 5844802 5846597 PREDICTED: Complement C1q tumor necrosis factor-related protein 3 nan K24236

For more detailed data, you can explore the Download section to access the full dataset.