CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.210 rna-evm.model.Chr13.210 Chr13 5798192 5799382 PREDICTED: FMRFamide receptor GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr13.2100 rna-evm.model.Chr13.2100 Chr13 62118547 62128426 PREDICTED: Leucine-rich repeat protein SHOC-2 GO:0005515 K12796
gene-evm.TU.Chr13.2101 rna-evm.model.Chr13.2101 Chr13 62133868 62135682 PREDICTED: Mitochondrial fission 1 protein nan K17969
gene-evm.TU.Chr13.2102 rna-evm.model.Chr13.2102.2 Chr13 62146088 62181119 PREDICTED: Malignant fibrous histiocytoma-amplified sequence 1 GO:0005515 K08844
gene-evm.TU.Chr13.2104 rna-evm.model.Chr13.2104 Chr13 62183264 62194787 PREDICTED: Tubulin beta chain GO:0003924;GO:0005200;GO:0005525;GO:0005874;GO:0007017 K07375
gene-evm.TU.Chr13.2105 rna-evm.model.Chr13.2105.2 Chr13 62204690 62222687 PREDICTED: LIM domain-containing protein unc-97 nan K23354
gene-evm.TU.Chr13.2106 rna-evm.model.Chr13.2106 Chr13 62253619 62261345 PREDICTED: Nucleoside diphosphate kinase 7 GO:0004550;GO:0005524;GO:0006165;GO:0006183;GO:0006228;GO:0006241 K19868
gene-evm.TU.Chr13.2107 rna-evm.model.Chr13.2107 Chr13 62269221 62282024 PREDICTED: Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial GO:0003824;GO:0005524;GO:0006099;GO:0046872 K01900
gene-evm.TU.Chr13.2108 rna-evm.model.Chr13.2108 Chr13 62291003 62295941 uncharacterized protein nan K04763
gene-evm.TU.Chr13.2109 rna-evm.model.Chr13.2109 Chr13 62295717 62373951 PREDICTED: Trithorax group protein osa GO:0003677 K11653

For more detailed data, you can explore the Download section to access the full dataset.