CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.2085 rna-evm.model.Chr13.2085 Chr13 61671540 61674451 uncharacterized protein nan K03098
gene-evm.TU.Chr13.2087 rna-evm.model.Chr13.2087 Chr13 61707192 61714534 PREDICTED: apolipoprotein D and lipocalin family protein nan K18271
gene-evm.TU.Chr13.2088 rna-evm.model.Chr13.2088 Chr13 61744991 61745750 uncharacterized protein nan K18271
gene-evm.TU.Chr13.2089 rna-evm.model.Chr13.2089 Chr13 61799731 61800120 uncharacterized protein nan nan
gene-evm.TU.Chr13.209 rna-evm.model.Chr13.209 Chr13 5706218 5709072 uncharacterized protein nan nan
gene-evm.TU.Chr13.2092 rna-evm.model.Chr13.2092 Chr13 61892727 61915145 PREDICTED: Matrix metalloproteinase-14 GO:0004222;GO:0006508;GO:0008237;GO:0008270;GO:0031012 K07763
gene-evm.TU.Chr13.2094 rna-evm.model.Chr13.2094 Chr13 62009616 62024158 PREDICTED: Guanine deaminase GO:0006147;GO:0008270;GO:0008892;GO:0016787 K01487
gene-evm.TU.Chr13.2097 rna-evm.model.Chr13.2097 Chr13 62067297 62069506 PREDICTED: Kelch domain-containing protein 10 GO:0005515 K25809
gene-evm.TU.Chr13.2098 rna-evm.model.Chr13.2098.1 Chr13 62081046 62104318 PREDICTED: Centrosomal protein of 63 kDa nan K16763
gene-evm.TU.Chr13.2099 rna-evm.model.Chr13.2099 Chr13 62106187 62112258 PREDICTED: COMM domain-containing protein 2 nan K22558

For more detailed data, you can explore the Download section to access the full dataset.