CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.188 rna-evm.model.Chr1.188 Chr1 5884451 5916870 PREDICTED: Hepatic leukemia factor GO:0003700;GO:0006355;GO:0006357 K09057
gene-evm.TU.Chr1.1880 rna-evm.model.Chr1.1880 Chr1 59855370 59867454 PREDICTED: Tetratricopeptide repeat protein 29 GO:0005515 K24937
gene-evm.TU.Chr1.1882 rna-evm.model.Chr1.1882 Chr1 59883061 59884277 PREDICTED: Protein THEM6 nan K12500
gene-evm.TU.Chr1.1883 rna-evm.model.Chr1.1883 Chr1 59887833 59888968 PREDICTED: Thioredoxin domain-containing protein 9 GO:0045454 K03671
gene-evm.TU.Chr1.1884 rna-evm.model.Chr1.1884 Chr1 59936965 60062385 PREDICTED: Rho GTPase-activating protein 7 GO:0007165;GO:0008289 K20632
gene-evm.TU.Chr1.1885 rna-evm.model.Chr1.1885 Chr1 60111464 60139010 PREDICTED: Armadillo repeat-containing protein 3 GO:0005515 K24124
gene-evm.TU.Chr1.1886 rna-evm.model.Chr1.1886 Chr1 60151374 60160442 PREDICTED: Uncharacterized protein C8orf48 homolog nan nan
gene-evm.TU.Chr1.1887 rna-evm.model.Chr1.1887 Chr1 60161273 60162783 uncharacterized protein nan nan
gene-evm.TU.Chr1.1888 rna-evm.model.Chr1.1888 Chr1 60173226 60195115 PREDICTED: Protein WWC2 GO:0005515 K16685
gene-evm.TU.Chr1.1889 rna-evm.model.Chr1.1889 Chr1 60205511 60211021 PREDICTED: 60S ribosomal protein L21 GO:0003735;GO:0005840;GO:0006412 K02889

For more detailed data, you can explore the Download section to access the full dataset.