CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.2057 rna-evm.model.Chr13.2057 Chr13 61109484 61118855 PREDICTED: Hemicentin-1 GO:0005515 K16857
gene-evm.TU.Chr13.2058 rna-evm.model.Chr13.2058 Chr13 61125186 61128573 PREDICTED: Protein toll GO:0005515;GO:0007165 K18809
gene-evm.TU.Chr13.2059 rna-evm.model.Chr13.2059 Chr13 61130253 61144118 PREDICTED: Protein toll GO:0005515;GO:0007165 K18809
gene-evm.TU.Chr13.2060 rna-evm.model.Chr13.2060 Chr13 61148474 61161425 uncharacterized protein nan K24429
gene-evm.TU.Chr13.2061 rna-evm.model.Chr13.2061.1 Chr13 61161728 61169490 PREDICTED: Kyphoscoliosis peptidase nan K24456
gene-evm.TU.Chr13.2062 rna-evm.model.Chr13.2062 Chr13 61214272 61214439 uncharacterized protein nan nan
gene-evm.TU.Chr13.2063 rna-evm.model.Chr13.2063 Chr13 61216021 61216581 PREDICTED: myotubularin-related protein 10/11/12 nan nan
gene-evm.TU.Chr13.2064 rna-evm.model.Chr13.2064 Chr13 61216688 61234738 PREDICTED: myotubularin-related protein 10/11/12 nan K21037
gene-evm.TU.Chr13.2066 rna-evm.model.Chr13.2066 Chr13 61276756 61302280 PREDICTED: Lysosome-associated membrane glycoprotein 1 GO:0016020 K06528
gene-evm.TU.Chr13.2067 rna-evm.model.Chr13.2067 Chr13 61309735 61310347 PREDICTED: Ribosome-binding protein 1 nan K17695

For more detailed data, you can explore the Download section to access the full dataset.