CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.2044 rna-evm.model.Chr13.2044 Chr13 60554875 60671430 PREDICTED: FERM, ARHGEF and pleckstrin domain-containing protein 2 GO:0005085;GO:0005856;GO:0035023 K06082
gene-evm.TU.Chr13.2046 rna-evm.model.Chr13.2046 Chr13 60703127 60704278 PREDICTED: protein kinase D [EC:2.7.11.13] nan K07164
gene-evm.TU.Chr13.2048 rna-evm.model.Chr13.2048 Chr13 60721520 60722452 PREDICTED: CD109 antigen nan nan
gene-evm.TU.Chr13.2050 rna-evm.model.Chr13.2050 Chr13 60766422 60797138 PREDICTED: Centrosomal protein of 44 kDa nan K16761
gene-evm.TU.Chr13.2051 rna-evm.model.Chr13.2051 Chr13 60808032 60815628 PREDICTED: Myosin catalytic light chain LC-1, mantle muscle GO:0005509 K12751
gene-evm.TU.Chr13.2052 rna-evm.model.Chr13.2052 Chr13 60927028 60927321 PREDICTED: Transposable element Tc1 transposase nan K07494
gene-evm.TU.Chr13.2053 rna-evm.model.Chr13.2053 Chr13 60953161 60974731 PREDICTED: Kelch-like protein 9 GO:0005515 K10463
gene-evm.TU.Chr13.2054 rna-evm.model.Chr13.2054 Chr13 60975660 60980065 uncharacterized protein nan K11306
gene-evm.TU.Chr13.2055 rna-evm.model.Chr13.2055 Chr13 60983415 61037226 PREDICTED: Low-density lipoprotein receptor-related protein 4 nan K20051
gene-evm.TU.Chr13.2056 rna-evm.model.Chr13.2056 Chr13 61063696 61083522 PREDICTED: Angiomotin nan K16819

For more detailed data, you can explore the Download section to access the full dataset.