CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.2028 rna-evm.model.Chr13.2028 Chr13 60121100 60133632 uncharacterized protein nan K10059
gene-evm.TU.Chr13.203 rna-evm.model.Chr13.203 Chr13 5521859 5537026 uncharacterized protein GO:0106274;GO:0006471 K19977
gene-evm.TU.Chr13.2031 rna-evm.model.Chr13.2031 Chr13 60167228 60168815 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan K04763
gene-evm.TU.Chr13.2032 rna-evm.model.Chr13.2032 Chr13 60168928 60169131 uncharacterized protein nan K21754
gene-evm.TU.Chr13.2033 rna-evm.model.Chr13.2033 Chr13 60220274 60227432 PREDICTED: Glutamate receptor ionotropic, kainate 2 GO:0004970;GO:0005216;GO:0006811;GO:0016020;GO:0038023 K05198
gene-evm.TU.Chr13.2035 rna-evm.model.Chr13.2035 Chr13 60227870 60237363 uncharacterized protein nan K05198
gene-evm.TU.Chr13.2036_evm.TU.Chr13.2037 rna-evm.model.Chr13.2036_evm.model.Chr13.2037 Chr13 60269066 60287822 PREDICTED: Cysteine protease ATG4B GO:0004197;GO:0006508;GO:0006914 K08342
gene-evm.TU.Chr13.2038 rna-evm.model.Chr13.2038 Chr13 60301217 60427665 PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 20 GO:0004222;GO:0006508 K08617
gene-evm.TU.Chr13.204_evm.TU.Chr13.206 rna-evm.model.Chr13.204_evm.model.Chr13.206 Chr13 5563374 5611382 uncharacterized protein nan K06252
gene-evm.TU.Chr13.2043 rna-evm.model.Chr13.2043 Chr13 60515968 60539138 PREDICTED: Transmembrane protein 254 nan nan

For more detailed data, you can explore the Download section to access the full dataset.