CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.2011 rna-evm.model.Chr13.2011 Chr13 59544199 59552846 PREDICTED: Neuronal acetylcholine receptor subunit alpha-3 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr13.2016 rna-evm.model.Chr13.2016 Chr13 59609350 59610787 PREDICTED: Zinc finger BED domain-containing protein 4 nan K24637
gene-evm.TU.Chr13.2017 rna-evm.model.Chr13.2017 Chr13 59610913 59611200 PREDICTED: zinc finger BED domain-containing protein 4-like nan K24637
gene-evm.TU.Chr13.2018 rna-evm.model.Chr13.2018 Chr13 59611242 59611823 PREDICTED: Zinc finger BED domain-containing protein 1 GO:0046983 K24637
gene-evm.TU.Chr13.2019 rna-evm.model.Chr13.2019 Chr13 59657176 59661951 PREDICTED: solute carrier family 8 (sodium/calcium exchanger) nan nan
gene-evm.TU.Chr13.202 rna-evm.model.Chr13.202 Chr13 5508751 5518452 uncharacterized protein GO:0106274;GO:0006471 K19977
gene-evm.TU.Chr13.2020 rna-evm.model.Chr13.2020 Chr13 59661975 59665307 PREDICTED: solute carrier family 8 (sodium/calcium exchanger) nan K07485
gene-evm.TU.Chr13.2024 rna-evm.model.Chr13.2024 Chr13 59817652 59826020 uncharacterized protein nan K12034
gene-evm.TU.Chr13.2025 rna-evm.model.Chr13.2025 Chr13 59863442 59864170 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K09892
gene-evm.TU.Chr13.2026 rna-evm.model.Chr13.2026 Chr13 59908088 59910963 PREDICTED: LWamide neuropeptides nan K05263

For more detailed data, you can explore the Download section to access the full dataset.