CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.20 rna-evm.model.Chr13.20 Chr13 412607 418815 PREDICTED: Exonuclease DPD1, chloroplastic/mitochondrial nan K10054
gene-evm.TU.Chr13.200 rna-evm.model.Chr13.200 Chr13 5466700 5467902 uncharacterized protein GO:0106274;GO:0006471 K19980
gene-evm.TU.Chr13.2000 rna-evm.model.Chr13.2000 Chr13 59223849 59256308 PREDICTED: Monocarboxylate transporter 12 GO:0016020;GO:0055085 K08181
gene-evm.TU.Chr13.2001 rna-evm.model.Chr13.2001 Chr13 59260998 59266817 PREDICTED: Monocarboxylate transporter 12 GO:0016020;GO:0055085 K08181
gene-evm.TU.Chr13.2002 rna-evm.model.Chr13.2002 Chr13 59269401 59277380 PREDICTED: Monocarboxylate transporter 5 GO:0016020;GO:0055085 K08181
gene-evm.TU.Chr13.2004 rna-evm.model.Chr13.2004 Chr13 59285651 59286468 uncharacterized protein nan K26219
gene-evm.TU.Chr13.2007 rna-evm.model.Chr13.2007 Chr13 59322109 59331688 PREDICTED: trichohyalin-like nan K13082
gene-evm.TU.Chr13.2008 rna-evm.model.Chr13.2008 Chr13 59403124 59446061 PREDICTED: Diacylglycerol kinase delta GO:0004143;GO:0005515;GO:0007165;GO:0007205;GO:0016301;GO:0035556 K00901
gene-evm.TU.Chr13.2009 rna-evm.model.Chr13.2009.1 Chr13 59472400 59474274 PREDICTED: Probable N-acetyltransferase 16 nan K22888
gene-evm.TU.Chr13.201 rna-evm.model.Chr13.201 Chr13 5478358 5497621 PREDICTED: Neuropeptide SIFamide receptor GO:0004930;GO:0004983;GO:0007186;GO:0016020 K04194

For more detailed data, you can explore the Download section to access the full dataset.