CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1989 rna-evm.model.Chr13.1989 Chr13 59043291 59046207 PREDICTED: metalloproteinase inhibitor 3 GO:0008191 K16866
gene-evm.TU.Chr13.199 rna-evm.model.Chr13.199 Chr13 5447924 5456803 PREDICTED: salivary glue protein Sgs-3-like nan K13732
gene-evm.TU.Chr13.1990 rna-evm.model.Chr13.1990 Chr13 59054429 59057164 uncharacterized protein GO:0008191 K16866
gene-evm.TU.Chr13.1991 rna-evm.model.Chr13.1991 Chr13 59060889 59066020 uncharacterized protein GO:0005515;GO:0008191 K16866
gene-evm.TU.Chr13.1992 rna-evm.model.Chr13.1992 Chr13 59068035 59088498 PREDICTED: RNA-binding motif protein, X chromosome GO:0003676 K12885
gene-evm.TU.Chr13.1993 rna-evm.model.Chr13.1993 Chr13 59130603 59136068 PREDICTED: Protein PELPK1 nan K13717
gene-evm.TU.Chr13.1995 rna-evm.model.Chr13.1995 Chr13 59146928 59162800 PREDICTED: H/ACA ribonucleoprotein complex subunit 4 GO:0003723;GO:0006396 K11131
gene-evm.TU.Chr13.1996 rna-evm.model.Chr13.1996 Chr13 59164433 59173319 PREDICTED: Translationally-controlled tumor protein homolog nan nan
gene-evm.TU.Chr13.1997 rna-evm.model.Chr13.1997 Chr13 59180640 59182136 PREDICTED: b(0,+)-type amino acid transporter 1 GO:0016020;GO:0022857;GO:0055085 K13868
gene-evm.TU.Chr13.1998 rna-evm.model.Chr13.1998 Chr13 59193719 59195625 PREDICTED: b(0,+)-type amino acid transporter 1 GO:0016020;GO:0022857;GO:0055085 K13868

For more detailed data, you can explore the Download section to access the full dataset.