CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1979 rna-evm.model.Chr13.1979 Chr13 58795341 58816803 PREDICTED: transcription initiation factor TFIID subunit 15 nan nan
gene-evm.TU.Chr13.198 rna-evm.model.Chr13.198 Chr13 5432517 5444488 uncharacterized protein nan nan
gene-evm.TU.Chr13.1980 rna-evm.model.Chr13.1980 Chr13 58837739 58853469 uncharacterized protein nan K11446
gene-evm.TU.Chr13.1981 rna-evm.model.Chr13.1981 Chr13 58870516 58894670 PREDICTED: Membrane metallo-endopeptidase-like 1 GO:0004222;GO:0006508 K08635
gene-evm.TU.Chr13.1982 rna-evm.model.Chr13.1982 Chr13 58895247 58900608 PREDICTED: sporulation-specific protein 15-like nan K09892
gene-evm.TU.Chr13.1983 rna-evm.model.Chr13.1983 Chr13 58908021 58938854 PREDICTED: Asparagine-rich protein nan K11694
gene-evm.TU.Chr13.1984 rna-evm.model.Chr13.1984 Chr13 58951382 58960662 uncharacterized protein nan nan
gene-evm.TU.Chr13.1985 rna-evm.model.Chr13.1985 Chr13 58988070 58991151 uncharacterized protein nan nan
gene-evm.TU.Chr13.1987 rna-evm.model.Chr13.1987 Chr13 59020208 59020531 PREDICTED: protein kinase D [EC:2.7.11.13] nan K15048
gene-evm.TU.Chr13.1988 rna-evm.model.Chr13.1988 Chr13 59028331 59031608 PREDICTED: metalloproteinase inhibitor 3 GO:0008191 K16866

For more detailed data, you can explore the Download section to access the full dataset.