CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1967 rna-evm.model.Chr13.1967 Chr13 58140537 58141664 PREDICTED: FMRFamide receptor GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr13.1968 rna-evm.model.Chr13.1968 Chr13 58169999 58188399 PREDICTED: calreticulin nan K26448
gene-evm.TU.Chr13.197 rna-evm.model.Chr13.197 Chr13 5419784 5430520 PREDICTED: complement component 1, s subcomponent [EC:3.4.21.42] nan K17305
gene-evm.TU.Chr13.1970 rna-evm.model.Chr13.1970 Chr13 58448550 58449557 PREDICTED: collagen, type VIII, alpha nan K09168
gene-evm.TU.Chr13.1971 rna-evm.model.Chr13.1971 Chr13 58480666 58496436 PREDICTED: Solute carrier family 23 member 1 GO:0016020;GO:0022857;GO:0055085 K14611
gene-evm.TU.Chr13.1972 rna-evm.model.Chr13.1972 Chr13 58504803 58506379 uncharacterized protein nan nan
gene-evm.TU.Chr13.1973 rna-evm.model.Chr13.1973 Chr13 58513329 58523242 PREDICTED: Monocarboxylate transporter 9 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr13.1974 rna-evm.model.Chr13.1974 Chr13 58558647 58675242 PREDICTED: Fibronectin type-III domain-containing protein 3A GO:0005515 K24485
gene-evm.TU.Chr13.1977 rna-evm.model.Chr13.1977 Chr13 58721292 58756154 uncharacterized protein nan nan
gene-evm.TU.Chr13.1978 rna-evm.model.Chr13.1978 Chr13 58770091 58791377 PREDICTED: Probable poly(ADP-ribose) glycohydrolase 2 GO:0004649;GO:0005975 K07759

For more detailed data, you can explore the Download section to access the full dataset.