CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1863 rna-evm.model.Chr1.1863 Chr1 59390919 59394492 PREDICTED: Transcriptional regulator ovo GO:0003676 K09216
gene-evm.TU.Chr1.1867 rna-evm.model.Chr1.1867 Chr1 59447549 59450849 PREDICTED: peripheral myelin protein 22 nan K24190
gene-evm.TU.Chr1.1868 rna-evm.model.Chr1.1868 Chr1 59457167 59480652 PREDICTED: Xanthine dehydrogenase GO:0016491;GO:0055114;GO:0071949 K00106
gene-evm.TU.Chr1.1869 rna-evm.model.Chr1.1869 Chr1 59484281 59491744 PREDICTED: Aldehyde oxidase 3 GO:0016491;GO:0055114 K00106
gene-evm.TU.Chr1.187 rna-evm.model.Chr1.187 Chr1 5860764 5872124 PREDICTED: Transmembrane protein 33 GO:0016020 K20724
gene-evm.TU.Chr1.1870 rna-evm.model.Chr1.1870 Chr1 59635936 59641820 PREDICTED: Transcriptional regulator ovo GO:0003676 K09216
gene-evm.TU.Chr1.1874 rna-evm.model.Chr1.1874 Chr1 59754748 59762217 PREDICTED: Transcriptional regulator ovo GO:0003676 K09216
gene-evm.TU.Chr1.1877 rna-evm.model.Chr1.1877 Chr1 59802209 59826774 PREDICTED: Sterol regulatory element-binding protein 1 GO:0046983 K07197
gene-evm.TU.Chr1.1878 rna-evm.model.Chr1.1878 Chr1 59826961 59833467 PREDICTED: Sequestosome-1 GO:0005515;GO:0008270 K14381
gene-evm.TU.Chr1.1879 rna-evm.model.Chr1.1879 Chr1 59848528 59852269 PREDICTED: Sequestosome-1 GO:0005515;GO:0008270 K14381

For more detailed data, you can explore the Download section to access the full dataset.