CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1944 rna-evm.model.Chr13.1944 Chr13 56976630 56978380 PREDICTED: importin-4 nan K11703
gene-evm.TU.Chr13.1945 rna-evm.model.Chr13.1945 Chr13 56988142 56989908 PREDICTED: KRAB domain-containing zinc finger protein nan nan
gene-evm.TU.Chr13.1946 rna-evm.model.Chr13.1946 Chr13 56996335 57028863 PREDICTED: Uncharacterized protein C5orf34 homolog nan nan
gene-evm.TU.Chr13.1947 rna-evm.model.Chr13.1947 Chr13 57057425 57058489 PREDICTED: Neuromedin-U receptor 2 GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr13.1948 rna-evm.model.Chr13.1948 Chr13 57071739 57079685 uncharacterized protein nan K20933
gene-evm.TU.Chr13.1949 rna-evm.model.Chr13.1949 Chr13 57091314 57100800 PREDICTED: FMRFamide receptor GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr13.195 rna-evm.model.Chr13.195 Chr13 5405411 5412026 uncharacterized protein GO:0005576;GO:0006030;GO:0008061 K20081
gene-evm.TU.Chr13.1950 rna-evm.model.Chr13.1950 Chr13 57115362 57116496 PREDICTED: FMRFamide receptor GO:0004930;GO:0007186;GO:0016020 K26201
gene-evm.TU.Chr13.1951 rna-evm.model.Chr13.1951 Chr13 57182898 57183431 PREDICTED: odorant receptor nan K07488
gene-evm.TU.Chr13.1954 rna-evm.model.Chr13.1954 Chr13 57194271 57194620 PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D GO:0003676 nan

For more detailed data, you can explore the Download section to access the full dataset.