CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1928 rna-evm.model.Chr13.1928 Chr13 56888694 56889995 PREDICTED: Uncharacterized protein F54H12.2 GO:0055114 nan
gene-evm.TU.Chr13.193 rna-evm.model.Chr13.193 Chr13 5371929 5381866 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 GO:0005576;GO:0006030;GO:0008061 K24469
gene-evm.TU.Chr13.1934 rna-evm.model.Chr13.1934 Chr13 56894791 56895447 uncharacterized protein nan K12063
gene-evm.TU.Chr13.1935 rna-evm.model.Chr13.1935 Chr13 56895494 56896880 uncharacterized protein nan nan
gene-evm.TU.Chr13.1939 rna-evm.model.Chr13.1939 Chr13 56905005 56905755 uncharacterized protein nan K06544
gene-evm.TU.Chr13.194 rna-evm.model.Chr13.194 Chr13 5391067 5394139 PREDICTED: Cerebellin-1 nan K23284
gene-evm.TU.Chr13.1940 rna-evm.model.Chr13.1940 Chr13 56914297 56923113 uncharacterized protein nan K19608
gene-evm.TU.Chr13.1941 rna-evm.model.Chr13.1941 Chr13 56925235 56951873 PREDICTED: Renin receptor GO:0016020;GO:0038023 K19514
gene-evm.TU.Chr13.1942 rna-evm.model.Chr13.1942 Chr13 56959464 56979578 uncharacterized protein nan K11244
gene-evm.TU.Chr13.1943 rna-evm.model.Chr13.1943 Chr13 56971255 56971827 PREDICTED: nuclease HARBI1 [EC:3.1.-.-] nan K23222

For more detailed data, you can explore the Download section to access the full dataset.