CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1914 rna-evm.model.Chr13.1914 Chr13 56625573 56627422 uncharacterized protein nan K10652
gene-evm.TU.Chr13.1915 rna-evm.model.Chr13.1915 Chr13 56644784 56718392 PREDICTED: E3 ubiquitin-protein ligase TRIP12 GO:0004842;GO:0008270 K10590
gene-evm.TU.Chr13.1916 rna-evm.model.Chr13.1916.1 Chr13 56725324 56754540 PREDICTED: Transcription factor Dp-1 GO:0000278;GO:0003700;GO:0003712;GO:0005667;GO:0006355;GO:0008134;GO:0051726 K09392
gene-evm.TU.Chr13.192 rna-evm.model.Chr13.192 Chr13 5356173 5363590 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 nan K24469
gene-evm.TU.Chr13.1920 rna-evm.model.Chr13.1920 Chr13 56791598 56793924 PREDICTED: Epsin-1 nan K07056
gene-evm.TU.Chr13.1923 rna-evm.model.Chr13.1923 Chr13 56814668 56818412 PREDICTED: Epsin-1 nan K07056
gene-evm.TU.Chr13.1924 rna-evm.model.Chr13.1924 Chr13 56821287 56822030 PREDICTED: Beta-1,3-galactosyltransferase 5 GO:0006486;GO:0008378;GO:0016020 K03877
gene-evm.TU.Chr13.1925 rna-evm.model.Chr13.1925 Chr13 56842544 56846581 PREDICTED: F-box/SPRY domain-containing protein 1 GO:0005515 K10319
gene-evm.TU.Chr13.1926 rna-evm.model.Chr13.1926 Chr13 56853610 56883021 PREDICTED: Mitochondrial intermediate peptidase GO:0004222;GO:0006508 K01410
gene-evm.TU.Chr13.1927 rna-evm.model.Chr13.1927 Chr13 56887486 56888280 PREDICTED: Putative thiol protease R355 nan K08597

For more detailed data, you can explore the Download section to access the full dataset.