CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.19 rna-evm.model.Chr13.19 Chr13 391158 392053 PREDICTED: aminopeptidase N [EC:3.4.11.2] nan K16599
gene-evm.TU.Chr13.190 rna-evm.model.Chr13.190 Chr13 5347944 5349020 PREDICTED: zinc finger MYM-type protein 2-like nan K24297
gene-evm.TU.Chr13.1900_evm.TU.Chr13.1913 rna-evm.model.Chr13.1900_evm.model.Chr13.1913 Chr13 56356261 56549671 PREDICTED: WD repeat-containing protein 73 nan K24754
gene-evm.TU.Chr13.1901 rna-evm.model.Chr13.1901 Chr13 56372840 56382416 PREDICTED: Metallo-beta-lactamase domain-containing protein 1 nan K13075
gene-evm.TU.Chr13.1902 rna-evm.model.Chr13.1902 Chr13 56382740 56390647 PREDICTED: Protein FAM124A nan K06657
gene-evm.TU.Chr13.1905 rna-evm.model.Chr13.1905 Chr13 56424813 56426743 PREDICTED: ATP-dependent DNA helicase RecQ nan K03654
gene-evm.TU.Chr13.1907 rna-evm.model.Chr13.1907 Chr13 56433227 56440800 PREDICTED: adhesive plaque matrix protein-like nan K21919
gene-evm.TU.Chr13.1908 rna-evm.model.Chr13.1908 Chr13 56446975 56448774 PREDICTED: CD109 antigen nan K24719
gene-evm.TU.Chr13.1909 rna-evm.model.Chr13.1909 Chr13 56468629 56472638 PREDICTED: collagen, type V/XI/XXIV/XXVII, alpha nan K10306
gene-evm.TU.Chr13.1912 rna-evm.model.Chr13.1912 Chr13 56523447 56527281 PREDICTED: Long-chain-fatty-acid--CoA ligase 3 GO:0003824 K01897

For more detailed data, you can explore the Download section to access the full dataset.