CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1872 rna-evm.model.Chr13.1872 Chr13 55800585 55806759 PREDICTED: Metallo-beta-lactamase domain-containing protein 1 nan K13075
gene-evm.TU.Chr13.1873 rna-evm.model.Chr13.1873 Chr13 55817392 55827113 PREDICTED: 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 nan K22928
gene-evm.TU.Chr13.1874 rna-evm.model.Chr13.1874 Chr13 55828522 55845308 PREDICTED: Regulator of nonsense transcripts 3A GO:0000184 K14328
gene-evm.TU.Chr13.1875 rna-evm.model.Chr13.1875 Chr13 55846397 55861825 PREDICTED: X-ray radiation resistance-associated protein 1 GO:0005515;GO:0010165 K21768
gene-evm.TU.Chr13.1876 rna-evm.model.Chr13.1876 Chr13 55864566 55895185 uncharacterized protein nan nan
gene-evm.TU.Chr13.1877 rna-evm.model.Chr13.1877 Chr13 56003099 56006830 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan K06423
gene-evm.TU.Chr13.1878 rna-evm.model.Chr13.1878 Chr13 56023594 56087631 uncharacterized protein nan nan
gene-evm.TU.Chr13.1879 rna-evm.model.Chr13.1879 Chr13 56095389 56106285 uncharacterized protein nan K13722
gene-evm.TU.Chr13.188 rna-evm.model.Chr13.188 Chr13 5317774 5325997 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 nan K24469
gene-evm.TU.Chr13.1880 rna-evm.model.Chr13.1880 Chr13 56111042 56118855 PREDICTED: Protein FAM124A nan K06657

For more detailed data, you can explore the Download section to access the full dataset.