CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1862 rna-evm.model.Chr13.1862 Chr13 55650840 55651972 PREDICTED: tripartite motif-containing protein 56 [EC:2.3.2.27] nan K12026
gene-evm.TU.Chr13.1863 rna-evm.model.Chr13.1863 Chr13 55657169 55670475 PREDICTED: Replication factor C subunit 4 GO:0005524 K10755
gene-evm.TU.Chr13.1864 rna-evm.model.Chr13.1864 Chr13 55676497 55683542 PREDICTED: Thioredoxin reductase-like selenoprotein T1b nan K22366
gene-evm.TU.Chr13.1866_evm.TU.Chr13.1865 rna-evm.model.Chr13.1866_evm.model.Chr13.1865 Chr13 55691326 55712413 PREDICTED: Transcription initiation factor TFIID subunit 9B GO:0006352 K14535
gene-evm.TU.Chr13.1867 rna-evm.model.Chr13.1867 Chr13 55715447 55734290 uncharacterized protein nan nan
gene-evm.TU.Chr13.1868 rna-evm.model.Chr13.1868 Chr13 55739073 55748703 PREDICTED: X-ray radiation resistance-associated protein 1 GO:0005515;GO:0010165 K21768
gene-evm.TU.Chr13.1869 rna-evm.model.Chr13.1869 Chr13 55752601 55772049 PREDICTED: Regulator of nonsense transcripts 3A GO:0000184 K14328
gene-evm.TU.Chr13.187 rna-evm.model.Chr13.187 Chr13 5316515 5316883 uncharacterized protein nan nan
gene-evm.TU.Chr13.1870 rna-evm.model.Chr13.1870 Chr13 55778062 55788041 PREDICTED: 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 nan K22928
gene-evm.TU.Chr13.1871 rna-evm.model.Chr13.1871 Chr13 55798051 55800125 PREDICTED: Metallo-beta-lactamase domain-containing protein 1 nan K13075

For more detailed data, you can explore the Download section to access the full dataset.