CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.184 rna-evm.model.Chr13.184 Chr13 5259547 5285918 PREDICTED: caprin-2 nan K24236
gene-evm.TU.Chr13.1840 rna-evm.model.Chr13.1840 Chr13 55326196 55330259 PREDICTED: Patatin-like phospholipase domain-containing protein 4 GO:0006629;GO:0016042;GO:0016787 K11157
gene-evm.TU.Chr13.1841 rna-evm.model.Chr13.1841 Chr13 55331773 55333592 PREDICTED: ATP-dependent DNA helicase PIF1 GO:0000723;GO:0003678;GO:0006281 K15255
gene-evm.TU.Chr13.1842 rna-evm.model.Chr13.1842 Chr13 55333606 55336234 PREDICTED: DNA transposase THAP9 [EC:2.7.7.-] nan K23209
gene-evm.TU.Chr13.1843 rna-evm.model.Chr13.1843 Chr13 55337187 55338565 PREDICTED: ATP-dependent DNA helicase PIF1 [EC:3.6.4.12] nan K13154
gene-evm.TU.Chr13.1844 rna-evm.model.Chr13.1844 Chr13 55340041 55340538 PREDICTED: Histone-lysine N-methyltransferase SETMAR nan K08328
gene-evm.TU.Chr13.1847 rna-evm.model.Chr13.1847 Chr13 55348261 55348566 PREDICTED: protein kinase D [EC:2.7.11.13] nan nan
gene-evm.TU.Chr13.1849 rna-evm.model.Chr13.1849 Chr13 55377562 55390485 PREDICTED: E3 ubiquitin-protein ligase Midline-1 GO:0008270 K12026
gene-evm.TU.Chr13.1850 rna-evm.model.Chr13.1850 Chr13 55400365 55403805 uncharacterized protein nan K04129
gene-evm.TU.Chr13.1851 rna-evm.model.Chr13.1851 Chr13 55436188 55437129 uncharacterized protein GO:0005164;GO:0006955;GO:0016020 K05478

For more detailed data, you can explore the Download section to access the full dataset.