CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1849 rna-evm.model.Chr1.1849 Chr1 59094566 59120455 PREDICTED: Histidine--tRNA ligase, cytoplasmic GO:0004812;GO:0005524;GO:0006418 K01892
gene-evm.TU.Chr1.1850 rna-evm.model.Chr1.1850 Chr1 59146933 59152480 PREDICTED: Heat shock 70 kDa protein 12A nan K04043
gene-evm.TU.Chr1.1853 rna-evm.model.Chr1.1853 Chr1 59188430 59195638 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr1.1854 rna-evm.model.Chr1.1854 Chr1 59200502 59212351 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr1.1856 rna-evm.model.Chr1.1856 Chr1 59223589 59233027 PREDICTED: Methyltransferase N6AMT1 GO:0008168 K19589
gene-evm.TU.Chr1.1858 rna-evm.model.Chr1.1858 Chr1 59240489 59243043 PREDICTED: Neuroligin-4, Y-linked nan K03927
gene-evm.TU.Chr1.1859 rna-evm.model.Chr1.1859 Chr1 59250727 59268444 PREDICTED: Pre-mRNA 3'-end-processing factor FIP1 GO:0005847;GO:0098789 K14405
gene-evm.TU.Chr1.1860 rna-evm.model.Chr1.1860 Chr1 59269731 59277779 uncharacterized protein nan nan
gene-evm.TU.Chr1.1861 rna-evm.model.Chr1.1861 Chr1 59306292 59309675 PREDICTED: Embryonic protein UVS.2 nan K14616
gene-evm.TU.Chr1.1862 rna-evm.model.Chr1.1862 Chr1 59314461 59375914 PREDICTED: Tyrosine-protein kinase BTK GO:0004672;GO:0004713;GO:0005515;GO:0005524;GO:0006468;GO:0035556 K07364

For more detailed data, you can explore the Download section to access the full dataset.