CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.182 rna-evm.model.Chr13.182 Chr13 5223238 5234319 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 nan K04004
gene-evm.TU.Chr13.1820 rna-evm.model.Chr13.1820 Chr13 54611832 54618250 PREDICTED: Dehydrogenase/reductase SDR family member 12 nan K11168
gene-evm.TU.Chr13.1822 rna-evm.model.Chr13.1822 Chr13 54665575 54669289 PREDICTED: Cx9C motif-containing protein 4 nan K23937
gene-evm.TU.Chr13.1823 rna-evm.model.Chr13.1823 Chr13 54669333 54691494 PREDICTED: Centromere protein I GO:0000776;GO:0034508 K11501
gene-evm.TU.Chr13.1824 rna-evm.model.Chr13.1824 Chr13 54726679 54814166 PREDICTED: Filamin-B GO:0005515 K04437
gene-evm.TU.Chr13.1825 rna-evm.model.Chr13.1825 Chr13 54820214 54827063 PREDICTED: Monocarboxylate transporter 5 GO:0016020;GO:0055085 K08181
gene-evm.TU.Chr13.1826 rna-evm.model.Chr13.1826 Chr13 54839019 54847400 PREDICTED: Baculoviral IAP repeat-containing protein 7-B nan K16061
gene-evm.TU.Chr13.1827 rna-evm.model.Chr13.1827 Chr13 54900619 54903136 PREDICTED: Jerky protein homolog-like GO:0003676;GO:0003677 K10750
gene-evm.TU.Chr13.1828 rna-evm.model.Chr13.1828 Chr13 54907104 54926299 PREDICTED: Integrator complex subunit 4 nan K13141
gene-evm.TU.Chr13.1829 rna-evm.model.Chr13.1829 Chr13 54926388 54988116 PREDICTED: Dedicator of cytokinesis protein 9 GO:0005085;GO:0007264 K21853

For more detailed data, you can explore the Download section to access the full dataset.