CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.183 rna-evm.model.Chr13.183 Chr13 5241835 5244336 PREDICTED: Complement C1q tumor necrosis factor-related protein 2 nan K23284
gene-evm.TU.Chr13.1830 rna-evm.model.Chr13.1830.1 Chr13 54988884 55063256 PREDICTED: Dedicator of cytokinesis protein 9 GO:0005085;GO:0007264 K21853
gene-evm.TU.Chr13.1831 rna-evm.model.Chr13.1831 Chr13 55089262 55089672 PREDICTED: heat shock 70 kDa protein 12A-like nan K02224
gene-evm.TU.Chr13.1832 rna-evm.model.Chr13.1832 Chr13 55118531 55120798 uncharacterized protein nan K10541
gene-evm.TU.Chr13.1833 rna-evm.model.Chr13.1833 Chr13 55135168 55163269 uncharacterized protein GO:0005164;GO:0006955;GO:0016020 K03161
gene-evm.TU.Chr13.1835 rna-evm.model.Chr13.1835 Chr13 55194121 55201349 PREDICTED: Probable E3 ubiquitin-protein ligase MID2 GO:0008270 K12026
gene-evm.TU.Chr13.1836 rna-evm.model.Chr13.1836 Chr13 55205892 55206251 PREDICTED: Mariner Mos1 transposase nan K21406
gene-evm.TU.Chr13.1837 rna-evm.model.Chr13.1837 Chr13 55264682 55270860 PREDICTED: Patatin-like phospholipase domain-containing protein 4 GO:0006629;GO:0016042;GO:0016787 K11157
gene-evm.TU.Chr13.1838 rna-evm.model.Chr13.1838 Chr13 55274272 55278453 PREDICTED: Profilin-3 nan K05759
gene-evm.TU.Chr13.1839 rna-evm.model.Chr13.1839 Chr13 55318855 55322835 PREDICTED: Profilin-3 nan K05759

For more detailed data, you can explore the Download section to access the full dataset.