CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1802 rna-evm.model.Chr13.1802 Chr13 53793848 53803738 PREDICTED: fibrillin 2/3 nan K25966
gene-evm.TU.Chr13.1803 rna-evm.model.Chr13.1803 Chr13 53807240 53822883 PREDICTED: Probable chitinase 10 GO:0005576;GO:0006030;GO:0008061 K23489
gene-evm.TU.Chr13.1804 rna-evm.model.Chr13.1804 Chr13 53958790 53973547 uncharacterized protein nan K14434
gene-evm.TU.Chr13.1806 rna-evm.model.Chr13.1806 Chr13 54165940 54168220 PREDICTED: Translation initiation factor IF-2 nan K15353
gene-evm.TU.Chr13.1809 rna-evm.model.Chr13.1809 Chr13 54286478 54297155 PREDICTED: Opsin-5 GO:0004930;GO:0007186;GO:0016020 K08385
gene-evm.TU.Chr13.181 rna-evm.model.Chr13.181 Chr13 5199474 5220715 PREDICTED: Tyrosine-protein kinase HTK16 GO:0004672;GO:0004713;GO:0005515;GO:0005524;GO:0006468 K17512
gene-evm.TU.Chr13.1813 rna-evm.model.Chr13.1813 Chr13 54537162 54542241 uncharacterized protein nan nan
gene-evm.TU.Chr13.1814 rna-evm.model.Chr13.1814 Chr13 54542248 54546409 PREDICTED: Monocarboxylate transporter 12 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr13.1815 rna-evm.model.Chr13.1815 Chr13 54546427 54556605 PREDICTED: Monocarboxylate transporter 5 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr13.1819 rna-evm.model.Chr13.1819 Chr13 54587709 54601692 PREDICTED: WD repeat and FYVE domain-containing protein 2 GO:0005515;GO:0046872 K23532

For more detailed data, you can explore the Download section to access the full dataset.