CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1791 rna-evm.model.Chr13.1791 Chr13 53467350 53476271 PREDICTED: Ubiquitin-associated domain-containing protein 2 nan K25216
gene-evm.TU.Chr13.1792 rna-evm.model.Chr13.1792 Chr13 53476571 53624138 PREDICTED: Membrane magnesium transporter 1 nan K23566
gene-evm.TU.Chr13.1793 rna-evm.model.Chr13.1793 Chr13 53630108 53636906 PREDICTED: Zinc finger protein 184 GO:0003676 K22402
gene-evm.TU.Chr13.1794 rna-evm.model.Chr13.1794 Chr13 53644970 53647514 uncharacterized protein nan K24375
gene-evm.TU.Chr13.1797 rna-evm.model.Chr13.1797 Chr13 53667764 53670381 PREDICTED: Coagulation factor IX GO:0005509 K01320
gene-evm.TU.Chr13.1798 rna-evm.model.Chr13.1798 Chr13 53670555 53670902 PREDICTED: Thrombospondin-1 nan K08621
gene-evm.TU.Chr13.1799 rna-evm.model.Chr13.1799 Chr13 53671421 53721609 PREDICTED: Neurogenic locus Notch protein GO:0005509 K02599
gene-evm.TU.Chr13.18 rna-evm.model.Chr13.18 Chr13 377672 379270 PREDICTED: proto-oncogene tyrosine-protein kinase ROS [EC:2.7.10.1] nan K16371
gene-evm.TU.Chr13.1800 rna-evm.model.Chr13.1800 Chr13 53724986 53737004 PREDICTED: Probable chitinase 10 GO:0005576;GO:0006030;GO:0008061 K23489
gene-evm.TU.Chr13.1801 rna-evm.model.Chr13.1801 Chr13 53769796 53789208 uncharacterized protein nan K14434

For more detailed data, you can explore the Download section to access the full dataset.