CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1768 rna-evm.model.Chr13.1768 Chr13 53073476 53073832 uncharacterized protein nan K20387
gene-evm.TU.Chr13.1770 rna-evm.model.Chr13.1770 Chr13 53075100 53075604 uncharacterized protein nan nan
gene-evm.TU.Chr13.1771 rna-evm.model.Chr13.1771 Chr13 53075877 53076224 PREDICTED: Putative uncharacterized transposon-derived protein F54H12.3 nan nan
gene-evm.TU.Chr13.1773 rna-evm.model.Chr13.1773 Chr13 53078181 53078480 uncharacterized protein nan nan
gene-evm.TU.Chr13.1774 rna-evm.model.Chr13.1774 Chr13 53078567 53078989 PREDICTED: E3 ubiquitin-protein ligase NEURL3 [EC:2.3.2.27] nan nan
gene-evm.TU.Chr13.1782 rna-evm.model.Chr13.1782 Chr13 53208015 53209508 PREDICTED: Metalloreductase STEAP4 nan K19876
gene-evm.TU.Chr13.1788 rna-evm.model.Chr13.1788 Chr13 53386262 53387850 PREDICTED: dolichyl-phosphate beta-glucosyltransferase [EC:2.4.1.117] nan nan
gene-evm.TU.Chr13.1789 rna-evm.model.Chr13.1789 Chr13 53400447 53424935 PREDICTED: Metalloreductase STEAP4 nan K19876
gene-evm.TU.Chr13.179 rna-evm.model.Chr13.179.5 Chr13 5107376 5156495 PREDICTED: Serine/threonine-protein kinase 25 GO:0004672;GO:0005524;GO:0006468 K08838
gene-evm.TU.Chr13.1790 rna-evm.model.Chr13.1790 Chr13 53432889 53451929 PREDICTED: Cullin-4A GO:0006511;GO:0031625 K10609

For more detailed data, you can explore the Download section to access the full dataset.