CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1733 rna-evm.model.Chr13.1733 Chr13 51825797 51827162 PREDICTED: nuclease HARBI1 [EC:3.1.-.-] nan K23222
gene-evm.TU.Chr13.1734 rna-evm.model.Chr13.1734 Chr13 51828716 51829531 PREDICTED: IMP dehydrogenase [EC:1.1.1.205] nan nan
gene-evm.TU.Chr13.1735 rna-evm.model.Chr13.1735 Chr13 51829643 51831009 PREDICTED: nuclease HARBI1 [EC:3.1.-.-] nan K23222
gene-evm.TU.Chr13.1739 rna-evm.model.Chr13.1739 Chr13 51894242 51905073 PREDICTED: Arylsulfatase J GO:0008484 K01135
gene-evm.TU.Chr13.1740 rna-evm.model.Chr13.1740 Chr13 51912356 51913846 uncharacterized protein nan K09168
gene-evm.TU.Chr13.1741 rna-evm.model.Chr13.1741 Chr13 51911524 51940371 PREDICTED: Glutamate receptor 2 GO:0004970;GO:0005216;GO:0006811;GO:0016020;GO:0038023 K05198
gene-evm.TU.Chr13.1742_evm.TU.Chr13.1743 rna-evm.model.Chr13.1742_evm.model.Chr13.1743 Chr13 51959422 51967466 PREDICTED: serine palmitoyltransferase [EC:2.3.1.50] nan K11379
gene-evm.TU.Chr13.1744 rna-evm.model.Chr13.1744 Chr13 51965697 51969579 PREDICTED: ATP-dependent DNA helicase RecQ GO:0003676;GO:0005524 K03654
gene-evm.TU.Chr13.1748 rna-evm.model.Chr13.1748 Chr13 52434224 52440458 uncharacterized protein nan K15372
gene-evm.TU.Chr13.175 rna-evm.model.Chr13.175 Chr13 5062042 5064801 PREDICTED: adenylyltransferase and sulfurtransferase [EC:2.7.7.80 2.8.1.11] nan K09885

For more detailed data, you can explore the Download section to access the full dataset.