CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1724 rna-evm.model.Chr13.1724 Chr13 51708031 51709461 uncharacterized protein GO:0003676;GO:0008270 K00983
gene-evm.TU.Chr13.1725 rna-evm.model.Chr13.1725 Chr13 51710712 51712211 uncharacterized protein nan K18746
gene-evm.TU.Chr13.1726 rna-evm.model.Chr13.1726 Chr13 51717324 51720060 uncharacterized protein nan nan
gene-evm.TU.Chr13.1727 rna-evm.model.Chr13.1727 Chr13 51732627 51750861 PREDICTED: Arylsulfatase B GO:0008484 K01135
gene-evm.TU.Chr13.1728 rna-evm.model.Chr13.1728 Chr13 51763780 51769341 uncharacterized protein nan K20723
gene-evm.TU.Chr13.1729 rna-evm.model.Chr13.1729 Chr13 51767227 51773289 PREDICTED: UDP-N-acetylglucosamine-lysosomal-enzyme [EC:2.7.8.17] nan K08239
gene-evm.TU.Chr13.173 rna-evm.model.Chr13.173 Chr13 5035084 5038867 PREDICTED: Thymidylate kinase nan K00943
gene-evm.TU.Chr13.1730 rna-evm.model.Chr13.1730 Chr13 51773958 51790487 PREDICTED: Arylsulfatase J GO:0008484 K01135
gene-evm.TU.Chr13.1731 rna-evm.model.Chr13.1731 Chr13 51816276 51823633 PREDICTED: Glutamate receptor 2 GO:0004970;GO:0016020 K05313
gene-evm.TU.Chr13.1732 rna-evm.model.Chr13.1732 Chr13 51825027 51825685 PREDICTED: IMP dehydrogenase [EC:1.1.1.205] nan nan

For more detailed data, you can explore the Download section to access the full dataset.