CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1699 rna-evm.model.Chr13.1699 Chr13 51128164 51150786 PREDICTED: Calpain-5 GO:0004198;GO:0006508 K08574
gene-evm.TU.Chr13.17 rna-evm.model.Chr13.17 Chr13 326426 333488 PREDICTED: E3 ubiquitin-protein ligase RNF216 [EC:2.3.2.31] nan K07671
gene-evm.TU.Chr13.1700 rna-evm.model.Chr13.1700 Chr13 51165893 51194872 PREDICTED: von Willebrand factor D and EGF domain-containing protein nan K18274
gene-evm.TU.Chr13.1702 rna-evm.model.Chr13.1702 Chr13 51252246 51265017 uncharacterized protein nan nan
gene-evm.TU.Chr13.1703 rna-evm.model.Chr13.1703 Chr13 51303864 51308623 PREDICTED: E3 ubiquitin-protein ligase TRIM56 GO:0008270 K12026
gene-evm.TU.Chr13.1704 rna-evm.model.Chr13.1704 Chr13 51310118 51315775 PREDICTED: Mannosyl phosphorylinositol ceramide synthase CSH1 nan K22721
gene-evm.TU.Chr13.1706 rna-evm.model.Chr13.1706 Chr13 51330130 51331098 PREDICTED: Mannosyl phosphorylinositol ceramide synthase CSH1 nan K22721
gene-evm.TU.Chr13.1709 rna-evm.model.Chr13.1709 Chr13 51374281 51386124 PREDICTED: Alpha-mannosidase 2x GO:0004559;GO:0006013 K01231
gene-evm.TU.Chr13.171 rna-evm.model.Chr13.171 Chr13 5018434 5029710 PREDICTED: E3 ubiquitin-protein ligase rnf168 GO:0046872 K20779
gene-evm.TU.Chr13.1710 rna-evm.model.Chr13.1710 Chr13 51395776 51405996 PREDICTED: CD109 antigen nan K04189

For more detailed data, you can explore the Download section to access the full dataset.