CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1010 rna-evm.model.Chr1.1010 Chr1 30845276 30846466 uncharacterized protein nan K05434
gene-evm.TU.Chr1.1011 rna-evm.model.Chr1.1011 Chr1 30849379 30857354 PREDICTED: L-methionine gamma-lyase GO:0030170 K01761
gene-evm.TU.Chr1.1012 rna-evm.model.Chr1.1012 Chr1 30870726 30935598 PREDICTED: Transient receptor potential cation channel subfamily M member-like 2 nan K04977
gene-evm.TU.Chr1.1014 rna-evm.model.Chr1.1014 Chr1 30948263 30950058 PREDICTED: Complement C1q tumor necrosis factor-related protein 3 nan K24236
gene-evm.TU.Chr1.1015 rna-evm.model.Chr1.1015 Chr1 30957347 30958805 PREDICTED: C1q-related factor nan K24236
gene-evm.TU.Chr1.1019 rna-evm.model.Chr1.1019 Chr1 31040489 31057525 PREDICTED: Protein inturned GO:0001736;GO:0005515;GO:0060271 K22862
gene-evm.TU.Chr1.102 rna-evm.model.Chr1.102 Chr1 3356328 3361421 uncharacterized protein nan nan
gene-evm.TU.Chr1.1020 rna-evm.model.Chr1.1020 Chr1 31059648 31060434 PREDICTED: Protein inturned GO:0001736;GO:0060271 K22862
gene-evm.TU.Chr1.1021 rna-evm.model.Chr1.1021 Chr1 31069319 31073893 PREDICTED: Deoxycytidylate deaminase nan K01493
gene-evm.TU.Chr1.1022 rna-evm.model.Chr1.1022 Chr1 31094550 31115865 PREDICTED: Protocadherin-11 X-linked GO:0005509;GO:0007156;GO:0016020 K16498

For more detailed data, you can explore the Download section to access the full dataset.